PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.07G058400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family LBD
Protein Properties Length: 221aa    MW: 23974.3 Da    PI: 7.5762
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.07G058400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.93.8e-292101195
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C++lr++C++dC+l++++     p++q++++ +v+k+FG++ ++++++++p ++r+ +++sl++eA  r+ +Pv+Gavg+++++++
  Manes.07G058400.1.p   2 SCNGCRILRKGCSDDCMLRQCLqgiddPQAQANATVFVAKFFGRAGLISFISSVPVHQRPSLFQSLLFEAVGRTVNPVSGAVGLLWTGNW 91 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaela 95 
                          +++q+++ ++
  Manes.07G058400.1.p  92 HVCQTAVMTV 101
                          ****987665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.3991107IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-25298IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSCNGCRILR KGCSDDCMLR QCLQGIDDPQ AQANATVFVA KFFGRAGLIS FISSVPVHQR  60
PSLFQSLLFE AVGRTVNPVS GAVGLLWTGN WHVCQTAVMT VLRGGAIEPM LDFDGRMLGQ  120
NLDNFSECSK FKPRNVSSGS KTTRTTTLKM KRSGDDDDES KCELTNLDLC LMYPTEKKLR  180
ATTPSEEESE TTTLVSGGST SAGTNCSLQG GERKLWPLFI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527499.11e-105PREDICTED: LOB domain-containing protein 39
SwissprotQ9SN231e-58LBD38_ARATH; LOB domain-containing protein 38
TrEMBLB9SND01e-105B9SND0_RICCO; LOB domain-containing protein, putative
STRINGPOPTR_0009s09270.13e-83(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.11e-58LOB domain-containing protein 39